PH01001385G0120's details annotation
1.Annotation
ICBR annotation: transmembrane protein 136, putative, expressed
Blast result AT1G35180 : 2.40E-73
Blast annotation: TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein
2.Location
Scaffold: PH01001385
Strand: +
| Region | Start | End |
| gene | 76114 | 78439 |
| mRNA | 76114 | 78439 |
| exon | 76114 | 76495 |
| exon | 76796 | 76936 |
| exon | 77059 | 77178 |
| exon | 77277 | 77372 |
| exon | 77537 | 77601 |
| exon | 77675 | 78439 |
| CDS | 76277 | 76495 |
| CDS | 76796 | 76936 |
| CDS | 77059 | 77178 |
| CDS | 77277 | 77372 |
| CDS | 77537 | 77601 |
| CDS | 77675 | 77774 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000185 | integral to membrane, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03798.15 | TRAM_LAG1_CLN8 | 33 | 211 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016021 | integral to membrane |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.