Annotation of co-expression genes

PH01001385G0130's details annotation

1.Annotation

ICBR annotation: transmembrane protein 136, putative, expressed

Blast result AT1G35180 : 3.90E-68
Blast annotation: TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein

2.Location

Scaffold: PH01001385
Strand: +

RegionStartEnd
gene7855680744
mRNA7855680744
exon7855678971
exon7953079670
exon7977379892
exon7998080075
exon8020480268
exon8034080744
CDS7875378971
CDS7953079670
CDS7977379892
CDS7998080075
CDS8020480268
CDS8034080511

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF03798.15TRAM_LAG1_CLN833210

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0016021integral to membrane

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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