Annotation of co-expression genes

PH01001393G0210's details annotation

1.Annotation

ICBR annotation: phosphatidylinositol transfer, putative, expressed

Blast result AT2G21520 : 1.00E-167
Blast annotation: Sec14p-like phosphatidylinositol transfer family protein

2.Location

Scaffold: PH01001393
Strand: -

RegionStartEnd
gene108768115613
mRNA108768115613
exon108768109450
exon110505110573
exon110866111269
exon111499111628
exon112124112222
exon112302112401
exon112477112526
exon112625112726
exon112919112996
exon113087113353
exon113445113541
exon113747114032
exon115257115613
CDS109382109450
CDS110505110573
CDS110866111269
CDS111499111628
CDS112124112222
CDS112302112401
CDS112477112526
CDS112625112726
CDS112919112996
CDS113087113353
CDS113445113541
CDS113747114032
CDS115257115437

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001391Lysine_biosynthesis
L,L-diaminopimelate_aminotransferase_activity
C3H Transcription_Regulator(from PlantTFDB)
lysine biosynthetic process via diaminopimelate,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF03765.14CRAL_TRIO_N141173
PF00650.19CRAL_TRIO197363

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0005215transporter activity
GO:0005622intracellular
GO:0006810transport

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.