PH01001394G0330's details annotation
1.Annotation
ICBR annotation: ribosomal protein L25, putative, expressed
Blast result AT4G23620 : 1.70E-89
Blast annotation: Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain
2.Location
Scaffold: PH01001394
Strand: -
| Region | Start | End |
| gene | 268716 | 272830 |
| mRNA | 268716 | 272830 |
| exon | 268716 | 269215 |
| exon | 269880 | 270009 |
| exon | 271503 | 272830 |
| CDS | 268995 | 269215 |
| CDS | 269880 | 270009 |
| CDS | 271503 | 271937 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000806 | Ribosome translation, intracellular, structural constituent of ribosome, 5S rRNA binding, regulation_of_cyclin-dependent_protein_serine/threonine_kinase_activity protein_kinase_binding |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01386.18 | Ribosomal_L25p | 58 | 160 |
| PF14693.5 | Ribosomal_TL5_C | 170 | 251 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Ribosome | large subunit ribosomal protein L25 | ko03011 | K02897 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003735 | structural constituent of ribosome |
| GO:0005622 | intracellular |
| GO:0005840 | ribosome |
| GO:0006412 | translation |
| GO:0008097 | 5S rRNA binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.