PH01001398G0110's details annotation
1.Annotation
ICBR annotation: OsFBX238 - F-box domain containing protein, expressed
Blast result AT5G07610 : 3.90E-18
Blast annotation: F-box family protein
2.Location
Scaffold: PH01001398
Strand: -
| Region | Start | End |
| gene | 55831 | 57849 |
| mRNA | 55831 | 57849 |
| exon | 55831 | 57849 |
| CDS | 56324 | 57448 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000319 | nucleoside_diphosphate_phosphorylation carbohydrate phosphorylation, histone_H4_acetylation UTP biosynthetic process, CTP biosynthetic process, histone_H2A_acetylation GTP biosynthetic process, aromatic amino acid family metabolic process, chromatin remodeling, |
| coexpression network | CFinderM000475 | TKL-Pl-6 (from iTAK) carbohydrate phosphorylation, RLK-Pelle_RLCK-VIIa-2 (from iTAK) galactokinase activity, diphosphate-fructose-6-phosphate 1-phosphotransferase activity, fructose_6-phosphate_metabolic_process galactose metabolic process, Fructose_and_mannose_metabolism Galactose_metabolism ATP binding, 6-phosphofructokinase activity, kinase activity, |
| coexpression network | CFinderM000824 | cytoplasm, aromatic amino acid family metabolic process, carbohydrate phosphorylation, galactose metabolic process, oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, galactokinase activity, iron ion binding, heme binding, electron carrier activity, kinase activity, Galactose_metabolism Amino_sugar_and_nucleotide_sugar_metabolism |
| coexpression network | CFinderM000915 | UTP biosynthetic process, nucleoside_diphosphate_phosphorylation CTP biosynthetic process, GTP biosynthetic process, regulation of actin filament polymerization, nucleoside diphosphate kinase activity, cytoskeleton, Pyrimidine_metabolism Purine_metabolism |
| coexpression network | CFinderM001536 | carbohydrate phosphorylation, galactose metabolic process, CAMK_CDPK (from iTAK) Others Transcription_Regulator(from iTAK) galactokinase activity, Galactose_metabolism Amino_sugar_and_nucleotide_sugar_metabolism |
| coexpression network | CFinderM001587 | Valine,_leucine_and_isoleucine_biosynthesis Valine,_leucine_and_isoleucine_degradation nucleoside_diphosphate_phosphorylation branched chain family amino acid metabolic process, CTP biosynthetic process, GTP biosynthetic process, UTP biosynthetic process, nucleoside diphosphate kinase activity, branched-chain-amino-acid transaminase activity, Pantothenate_and_CoA_biosynthesis |
| coexpression network | CFinderM001692 | TKL-Pl-4 (from iTAK) carbohydrate phosphorylation, Ribosome translation, galactose metabolic process, intracellular, galactokinase activity, Galactose_metabolism Amino_sugar_and_nucleotide_sugar_metabolism structural constituent of ribosome, kinase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00646.32 | F-box | 13 | 47 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.