PH01001400G0330's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT5G65560 : 4.00E-86
Blast annotation: Pentatricopeptide repeat (PPR) superfamily protein
2.Location
Scaffold: PH01001400
Strand: -
| Region | Start | End |
| gene | 238318 | 241353 |
| mRNA | 238318 | 241353 |
| exon | 238318 | 241353 |
| CDS | 238571 | 240229 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01535.19 | PPR | 13 | 41 |
| PF01535.19 | PPR | 87 | 111 |
| PF01535.19 | PPR | 119 | 147 |
| PF13041.5 | PPR_2 | 160 | 202 |
| PF13041.5 | PPR_2 | 223 | 272 |
| PF13041.5 | PPR_2 | 293 | 342 |
| PF13041.5 | PPR_2 | 364 | 411 |
| PF13041.5 | PPR_2 | 434 | 480 |
| PF01535.19 | PPR | 523 | 551 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.