Gene details

Annotation of co-expression genes

PH01001401G0380's details annotation

1.Annotation

ICBR annotation: 60S acidic ribosomal protein, putative, expressed

Blast result AT5G24510 : 1.10E-27
Blast annotation: 60S acidic ribosomal protein family

2.Location

Scaffold: PH01001401
Strand: +

3.Network

Co-expression Network Category	Global Network	Conditional Network
Co-expression Positive	Top300 PCC genelist MR network genelist	Top300 PCC genelist MR network genelist
Co-expression Negative	Top300 PCC genelist MR network genelist	Top300 PCC genelist MR network genelist
Predict protein-portein interaction	null
miRNA-targets relationship	null

4.Functional module

Method	Module ID	Function Annotation
coexpression network	CFinderM000339	Ribosome structural constituent of ribosome, intracellular, translation, Ribosome RNA binding, rRNA binding, translational elongation, small ribosomal subunit,
coexpression network	CFinderM000525	Ribosome structural constituent of ribosome, intracellular, translation, rRNA binding, small ribosomal subunit, RNA binding, Ribosome translational elongation,

5.Cis-elements

6.Expression profilings

7.Gene family

Category	Family
null	null

8.Protein domain

Pfam Accession	Pfam Annotation	Alignment Start	Alignment Start
PF00428.18	Ribosomal_60s	22	109

9.KEGG Pathway

Pathway	KEGG Ortholog	Pathway ID	KO
Ribosome	large subunit ribosomal protein LP1	ko03011	K02942

10.Gene Ontology

GO Accession	GO Annotation
GO:0003735	structural constituent of ribosome
GO:0005622	intracellular
GO:0005840	ribosome
GO:0006414	translational elongation

      Maintained by Xuelian Ma  - Zhen Su's Lab -  China Agricultural University

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