Annotation of co-expression genes

PH01001401G0400's details annotation

1.Annotation

ICBR annotation: seven in absentia protein family domain containing protein, expressed

Blast result AT3G61790 : 2.00E-123
Blast annotation: Protein with RING/U-box and TRAF-like domains

2.Location

Scaffold: PH01001401
Strand: -

RegionStartEnd
gene263286266968
mRNA263286266968
exon263286265080
exon265543265929
exon266470266968
CDS264760265080
CDS265543265929
CDS266470266532

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001052RLK-Pelle_Extensin (from iTAK)
CMGC_GSK (from iTAK)
Endocytosis
multicellular organismal development,
regulation of ARF GTPase activity,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF03145.15Sina50249

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0004842ubiquitin-protein ligase activity
GO:0005515protein binding
GO:0005634nucleus
GO:0006511ubiquitin-dependent protein catabolic process
GO:0007275multicellular organismal development
GO:0008270zinc ion binding
GO:0016567protein ubiquitination

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.