PH01001405G0050's details annotation
1.Annotation
ICBR annotation: protein kinase, putative, expressed
Blast result AT3G03770 : 0.00E+00
Blast annotation: Leucine-rich repeat protein kinase family protein
2.Location
Scaffold: PH01001405
Strand: +
| Region | Start | End |
| gene | 32594 | 38028 |
| mRNA | 32594 | 38028 |
| exon | 32594 | 35816 |
| exon | 35932 | 36065 |
| exon | 36313 | 36553 |
| exon | 36646 | 36854 |
| exon | 36960 | 36994 |
| exon | 37113 | 37224 |
| exon | 37321 | 37509 |
| exon | 37799 | 38028 |
| CDS | 34742 | 35816 |
| CDS | 35932 | 36065 |
| CDS | 36313 | 36553 |
| CDS | 36646 | 36854 |
| CDS | 36960 | 36994 |
| CDS | 37113 | 37224 |
| CDS | 37321 | 37509 |
| CDS | 37799 | 37897 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13855.5 | LRR_8 | 65 | 124 |
| PF07714.16 | Pkinase_Tyr | 398 | 657 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004672 | protein kinase activity |
| GO:0005524 | ATP binding |
| GO:0006468 | protein phosphorylation |
| GO:0016772 | transferase activity, transferring phosphorus-containing groups |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.