PH01001405G0090's details annotation
1.Annotation
ICBR annotation: peptidase M50, mammalian sterol-regulatory element binding protein, putative, expressed
Blast result AT5G35220 : 4.00E-153
Blast annotation: Peptidase M50 family protein
2.Location
Scaffold: PH01001405
Strand: +
| Region | Start | End |
| gene | 61036 | 68661 |
| mRNA | 61036 | 68661 |
| exon | 61036 | 62685 |
| exon | 63821 | 64291 |
| exon | 64383 | 64526 |
| exon | 65092 | 65193 |
| exon | 65704 | 65915 |
| exon | 66573 | 66642 |
| exon | 67665 | 67733 |
| exon | 67968 | 68661 |
| CDS | 62350 | 62685 |
| CDS | 63821 | 64291 |
| CDS | 64383 | 64526 |
| CDS | 65092 | 65193 |
| CDS | 65704 | 65915 |
| CDS | 66573 | 66642 |
| CDS | 67665 | 67733 |
| CDS | 67968 | 68027 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004222 | metalloendopeptidase activity |
| GO:0006508 | proteolysis |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.