PH01001408G0250's details annotation
1.Annotation
ICBR annotation: cation efflux family protein, putative
Blast result AT1G79520 : 1.70E-44
Blast annotation: Cation efflux family protein
2.Location
Scaffold: PH01001408
Strand: -
| Region | Start | End |
| gene | 156474 | 164470 |
| mRNA | 156474 | 164470 |
| exon | 156474 | 156678 |
| exon | 156879 | 157217 |
| exon | 157649 | 157729 |
| exon | 158653 | 158685 |
| exon | 158901 | 158986 |
| exon | 159359 | 159404 |
| exon | 159481 | 159513 |
| exon | 159601 | 159675 |
| exon | 160240 | 160252 |
| exon | 160576 | 160712 |
| exon | 161275 | 161328 |
| exon | 162437 | 162480 |
| exon | 162982 | 164470 |
| CDS | 156601 | 156678 |
| CDS | 156879 | 157217 |
| CDS | 157649 | 157729 |
| CDS | 158653 | 158685 |
| CDS | 158901 | 158986 |
| CDS | 159359 | 159404 |
| CDS | 159481 | 159513 |
| CDS | 159601 | 159675 |
| CDS | 160240 | 160252 |
| CDS | 160576 | 160712 |
| CDS | 161275 | 161328 |
| CDS | 162437 | 162480 |
| CDS | 162982 | 163069 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF07889.11 | DUF1664 C | 49 | 95 |
| PF16916.4 | ZT_dimer | 267 | 330 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0006812 | cation transport |
| GO:0008324 | cation transmembrane transporter activity |
| GO:0016021 | integral to membrane |
| GO:0055085 | transmembrane transport |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.