PH01001409G0360's details annotation
1.Annotation
ICBR annotation: pumilio-family RNA binding protein, putative, expressed
Blast result - : -
Blast annotation: -
2.Location
Scaffold: PH01001409
Strand: +
| Region | Start | End |
| gene | 202925 | 207538 |
| mRNA | 202925 | 207538 |
| exon | 202925 | 204088 |
| exon | 204177 | 204244 |
| exon | 204414 | 204440 |
| exon | 205339 | 205437 |
| exon | 206038 | 206319 |
| exon | 206415 | 206419 |
| exon | 206633 | 206774 |
| exon | 206860 | 207538 |
| CDS | 203998 | 204088 |
| CDS | 204177 | 204244 |
| CDS | 204414 | 204440 |
| CDS | 205339 | 205437 |
| CDS | 206038 | 206319 |
| CDS | 206415 | 206419 |
| CDS | 206633 | 206774 |
| CDS | 206860 | 206973 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from PlantTFDB) | HB-other |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00806.18 | PUF | 187 | 214 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003723 | RNA binding |
| GO:0005488 | binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.