PH01001411G0440's details annotation
1.Annotation
ICBR annotation: cystathionine gamma-synthase, putative, expressed
Blast result AT1G64660 : 9.00E-156
Blast annotation: methionine gamma-lyase
2.Location
Scaffold: PH01001411
Strand: +
| Region | Start | End |
| gene | 334252 | 335592 |
| mRNA | 334252 | 335592 |
| exon | 334252 | 335592 |
| CDS | 334341 | 335159 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01053.19 | Cys_Met_Meta_PP | 53 | 425 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Selenocompound metabolism | methionine-gamma-lyase [EC:4.4.1.11] | ko00450 | K01761 |
| Cysteine and methionine metabolism | methionine-gamma-lyase [EC:4.4.1.11] | ko00270 | K01761 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
| GO:0030170 | pyridoxal phosphate binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.