PH01001417G0030's details annotation
1.Annotation
ICBR annotation: OsSCP56 - Putative Serine Carboxypeptidase homologue, expressed
Blast result AT5G09640 : 7.00E-119
Blast annotation: serine carboxypeptidase-like 19
2.Location
Scaffold: PH01001417
Strand: +
| Region | Start | End |
| gene | 13081 | 18557 |
| mRNA | 13081 | 18557 |
| exon | 13081 | 14281 |
| exon | 14384 | 14529 |
| exon | 14625 | 14824 |
| exon | 14933 | 15035 |
| exon | 15160 | 15197 |
| exon | 15471 | 15575 |
| exon | 15696 | 15779 |
| exon | 15906 | 16058 |
| exon | 16548 | 16619 |
| exon | 16719 | 16840 |
| exon | 17650 | 17763 |
| exon | 17904 | 17949 |
| exon | 18076 | 18096 |
| exon | 18332 | 18557 |
| CDS | 14139 | 14281 |
| CDS | 14384 | 14529 |
| CDS | 14625 | 14824 |
| CDS | 14933 | 15035 |
| CDS | 15160 | 15197 |
| CDS | 15471 | 15575 |
| CDS | 15696 | 15779 |
| CDS | 15906 | 16058 |
| CDS | 16548 | 16619 |
| CDS | 16719 | 16840 |
| CDS | 17650 | 17763 |
| CDS | 17904 | 17949 |
| CDS | 18076 | 18096 |
| CDS | 18332 | 18415 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00450.21 | Peptidase_S10 | 35 | 473 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004185 | serine-type carboxypeptidase activity |
| GO:0006508 | proteolysis |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.