PH01001417G0250's details annotation
1.Annotation
ICBR annotation: OsSCP56 - Putative Serine Carboxypeptidase homologue, expressed
Blast result AT5G09640 : 3.40E-34
Blast annotation: serine carboxypeptidase-like 19
2.Location
Scaffold: PH01001417
Strand: +
| Region | Start | End |
| gene | 154625 | 161785 |
| mRNA | 154625 | 161785 |
| exon | 154625 | 155437 |
| exon | 157189 | 157226 |
| exon | 157383 | 157487 |
| exon | 157608 | 157691 |
| exon | 157818 | 157970 |
| exon | 159083 | 159112 |
| exon | 159510 | 159686 |
| exon | 160608 | 160681 |
| exon | 160823 | 160868 |
| exon | 160994 | 161014 |
| exon | 161501 | 161785 |
| CDS | 155194 | 155437 |
| CDS | 157189 | 157226 |
| CDS | 157383 | 157487 |
| CDS | 157608 | 157691 |
| CDS | 157818 | 157970 |
| CDS | 159083 | 159112 |
| CDS | 159510 | 159686 |
| CDS | 160608 | 160681 |
| CDS | 160823 | 160868 |
| CDS | 160994 | 161014 |
| CDS | 161501 | 161566 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000047 | isomerase activity, Brassinosteroid_biosynthesis carbohydrate metabolic process, carbohydrate binding, |
| coexpression network | CFinderM000480 | TKL-Pl-6 (from iTAK) ARF Transcription_Regulator(from PlantTFDB) B3-ARF Transcription_Regulator(from iTAK) glycerol metabolic process, glycerophosphodiester phosphodiesterase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00450.21 | Peptidase_S10 | 78 | 162 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004185 | serine-type carboxypeptidase activity |
| GO:0006508 | proteolysis |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.