PH01001418G0430's details annotation
1.Annotation
ICBR annotation: ribosomal protein L27, putative, expressed
Blast result AT5G40950 : 2.50E-62
Blast annotation: ribosomal protein large subunit 27
2.Location
Scaffold: PH01001418
Strand: -
| Region | Start | End |
| gene | 278429 | 282982 |
| mRNA | 278429 | 282982 |
| exon | 278429 | 279309 |
| exon | 279428 | 279529 |
| exon | 281360 | 282982 |
| CDS | 279133 | 279309 |
| CDS | 279428 | 279529 |
| CDS | 281360 | 281737 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01016.18 | Ribosomal_L27 | 53 | 132 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Ribosome | large subunit ribosomal protein L27 | ko03011 | K02899 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003735 | structural constituent of ribosome |
| GO:0005622 | intracellular |
| GO:0005840 | ribosome |
| GO:0006412 | translation |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.