PH01001428G0280's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT3G04490 : 9.00E-90
Blast annotation: -
2.Location
Scaffold: PH01001428
Strand: -
| Region | Start | End |
| gene | 191719 | 199458 |
| mRNA | 191719 | 199458 |
| exon | 191719 | 192877 |
| exon | 193169 | 193238 |
| exon | 193352 | 193548 |
| exon | 194399 | 194476 |
| exon | 195037 | 195087 |
| exon | 195361 | 195396 |
| exon | 196214 | 196357 |
| exon | 196462 | 196593 |
| exon | 196656 | 196758 |
| exon | 196841 | 196905 |
| exon | 196996 | 197067 |
| exon | 197822 | 197893 |
| exon | 198371 | 198607 |
| exon | 199042 | 199458 |
| CDS | 192689 | 192877 |
| CDS | 193169 | 193238 |
| CDS | 193352 | 193548 |
| CDS | 194399 | 194476 |
| CDS | 195037 | 195087 |
| CDS | 195361 | 195396 |
| CDS | 196214 | 196357 |
| CDS | 196462 | 196593 |
| CDS | 196656 | 196758 |
| CDS | 196841 | 196905 |
| CDS | 196996 | 197067 |
| CDS | 197822 | 197893 |
| CDS | 198371 | 198607 |
| CDS | 199042 | 199089 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000229 | GT2 GlycosylTransferases NuA4_histone_acetyltransferase_complex histone_H2A_acetylation protein homooligomerization, histone_H4_acetylation chromatin remodeling, negative_regulation_of_transcription,_DNA-templated RNA modification, pseudouridine synthesis, |
| coexpression network | CFinderM001333 |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005488 | binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.