PH01001431G0330's details annotation
1.Annotation
ICBR annotation: leucine-rich repeat family protein, putative, expressed
Blast result AT4G03010 : 3.20E-50
Blast annotation: RNI-like superfamily protein
2.Location
Scaffold: PH01001431
Strand: -
| Region | Start | End |
| gene | 290966 | 295125 |
| mRNA | 290966 | 295125 |
| exon | 290966 | 292607 |
| exon | 292809 | 295125 |
| CDS | 292179 | 292607 |
| CDS | 292809 | 293393 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000888 | phosphatidylinositol metabolic process, phosphatidylinositol phosphate kinase activity, Inositol_phosphate_metabolism Phosphatidylinositol_signaling_system RLK-Pelle_LRR-VI-1 (from iTAK) 1-phosphatidylinositol-4-phosphate 5-kinase activity, cellular protein metabolic process, Phagosome Endocytosis ATP binding, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF08263.11 | LRRNT_2 | 35 | 73 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.