PH01001432G0120's details annotation
1.Annotation
ICBR annotation: HVA22, putative, expressed
Blast result AT5G42560 : 5.40E-60
Blast annotation: Abscisic acid-responsive (TB2/DP1, HVA22) family protein
2.Location
Scaffold: PH01001432
Strand: +
| Region | Start | End |
| gene | 96274 | 102279 |
| mRNA | 96274 | 102279 |
| exon | 96274 | 97036 |
| exon | 97226 | 97324 |
| exon | 97413 | 97469 |
| exon | 97553 | 97616 |
| exon | 97691 | 97909 |
| exon | 100306 | 102279 |
| CDS | 96981 | 97036 |
| CDS | 97226 | 97324 |
| CDS | 97413 | 97469 |
| CDS | 97553 | 97616 |
| CDS | 97691 | 97909 |
| CDS | 100306 | 100848 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03134.18 | TB2_DP1_HVA22 | 27 | 105 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.