PH01001432G0330's details annotation
1.Annotation
ICBR annotation: AP2 domain containing protein, expressed
Blast result AT2G28550 : 9.30E-60
Blast annotation: related to AP2.7
2.Location
Scaffold: PH01001432
Strand: +
| Region | Start | End |
| gene | 241617 | 245592 |
| mRNA | 241617 | 245592 |
| exon | 241617 | 242714 |
| exon | 242819 | 242849 |
| exon | 242939 | 243026 |
| exon | 243128 | 243273 |
| exon | 243786 | 243830 |
| exon | 243937 | 244040 |
| exon | 244232 | 244368 |
| exon | 244644 | 244754 |
| exon | 245167 | 245592 |
| CDS | 242222 | 242714 |
| CDS | 242819 | 242849 |
| CDS | 242939 | 243026 |
| CDS | 243128 | 243273 |
| CDS | 243786 | 243830 |
| CDS | 243937 | 244040 |
| CDS | 244232 | 244368 |
| CDS | 244644 | 244754 |
| CDS | 245167 | 245184 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | AP2/ERF-ERF |
| Transcription_Regulator(from PlantTFDB) | AP2 |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00847.19 | AP2 | 229 | 279 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
| GO:0003700 | sequence-specific DNA binding transcription factor activity |
| GO:0006355 | regulation of transcription, DNA-dependent |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.