PH01001437G0220's details annotation
1.Annotation
ICBR annotation: casein kinase II subunit beta-4, putative, expressed
Blast result - : -
Blast annotation: -
2.Location
Scaffold: PH01001437
Strand: -
| Region | Start | End |
| gene | 132268 | 138580 |
| mRNA | 132268 | 138580 |
| exon | 132268 | 132605 |
| exon | 132645 | 132702 |
| exon | 133521 | 133675 |
| exon | 133739 | 133807 |
| exon | 134057 | 134670 |
| exon | 135078 | 135440 |
| exon | 135528 | 135753 |
| exon | 137480 | 137646 |
| exon | 137955 | 138580 |
| CDS | 132393 | 132605 |
| CDS | 132645 | 132702 |
| CDS | 133521 | 133675 |
| CDS | 133739 | 133807 |
| CDS | 134057 | 134670 |
| CDS | 135078 | 135440 |
| CDS | 135528 | 135753 |
| CDS | 137480 | 137646 |
| CDS | 137955 | 138147 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000371 | apoplast, lignin catabolic process, hydroquinone:oxygen_oxidoreductase_activity |
| coexpression network | CFinderM000400 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, nitrogen compound metabolic process, |
| coexpression network | CFinderM000401 | cullin-RING ubiquitin ligase complex, ubiquitin protein ligase binding, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.