PH01001438G0190's details annotation
1.Annotation
ICBR annotation: recA protein, expressed
Blast result AT3G57260 : 5.00E-67
Blast annotation: beta-1,3-glucanase 2
2.Location
Scaffold: PH01001438
Strand: -
| Region | Start | End |
| gene | 125795 | 127198 |
| mRNA | 125795 | 127198 |
| exon | 125795 | 126957 |
| exon | 127073 | 127198 |
| CDS | 126005 | 126957 |
| CDS | 127073 | 127145 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000016 | protein phosphorylation, protein kinase activity, transferase activity, transferring phosphorus-containing groups, protein serine/threonine kinase activity, ATP binding, RLK-Pelle_LRR-XII-1 (from iTAK) RLK-Pelle_DLSV (from iTAK) RLK-Pelle_WAK (from iTAK) ADP_binding polysaccharide_binding transmembrane_transporter_activity WRKY Transcription_Regulator(from PlantTFDB) recognition of pollen, transmembrane transport, defense response, RLK-Pelle_L-LEC (from iTAK) membrane, integral to membrane, RLK-Pelle_SD-2b (from iTAK) RLK-Pelle_WAK_LRK10L-1 (from iTAK) ATPase activity, substrate-specific transmembrane transporter activity, RLK-Pelle_LRR-XI-1 (from iTAK) 6-phosphofructokinase complex, |
| coexpression network | CFinderM000212 | RLK-Pelle_LRR-XI-1 (from iTAK) RLK-Pelle_RLCK-II (from iTAK) GH17 Glycoside_Hydrolases protein phosphorylation, ammonia-lyase activity, transferase activity, transferring phosphorus-containing groups, protein kinase activity, |
| coexpression network | CFinderM000213 | RLK-Pelle_RLCK-II (from iTAK) GH17 Glycoside_Hydrolases extracellular region, ammonia-lyase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Glycoside_Hydrolases | GH17 |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00332.17 | Glyco_hydro_17 | 29 | 338 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.