PH01001439G0160's details annotation
1.Annotation
ICBR annotation: metalloendopeptidase/ metallopeptidase/ zinc ion binding protein, putative, expressed
Blast result AT5G42620 : 0.00E+00
Blast annotation: metalloendopeptidases;zinc ion binding
2.Location
Scaffold: PH01001439
Strand: +
| Region | Start | End |
| gene | 123231 | 130332 |
| mRNA | 123231 | 130332 |
| exon | 123231 | 125504 |
| exon | 125945 | 126304 |
| exon | 126394 | 126534 |
| exon | 126685 | 126817 |
| exon | 126900 | 127013 |
| exon | 127106 | 127254 |
| exon | 129219 | 129311 |
| exon | 129451 | 129511 |
| exon | 129658 | 129932 |
| exon | 130080 | 130332 |
| CDS | 125442 | 125504 |
| CDS | 125945 | 126304 |
| CDS | 126394 | 126534 |
| CDS | 126685 | 126817 |
| CDS | 126900 | 127013 |
| CDS | 127106 | 127254 |
| CDS | 129219 | 129311 |
| CDS | 129451 | 129511 |
| CDS | 129658 | 129932 |
| CDS | 130080 | 130100 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01457.15 | Peptidase_M8 | 170 | 463 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004222 | metalloendopeptidase activity |
| GO:0006508 | proteolysis |
| GO:0007155 | cell adhesion |
| GO:0008270 | zinc ion binding |
| GO:0016020 | membrane |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.