PH01001439G0300's details annotation
1.Annotation
ICBR annotation: RNA recognition motif containing protein, putative, expressed
Blast result AT4G24270 : 1.10E-83
Blast annotation: EMBRYO DEFECTIVE 140
2.Location
Scaffold: PH01001439
Strand: +
| Region | Start | End |
| gene | 235169 | 239466 |
| mRNA | 235169 | 239466 |
| exon | 235169 | 236065 |
| exon | 236462 | 236595 |
| exon | 236719 | 236776 |
| exon | 236862 | 237347 |
| exon | 237940 | 239466 |
| CDS | 235829 | 236065 |
| CDS | 236462 | 236595 |
| CDS | 236719 | 236776 |
| CDS | 236862 | 237347 |
| CDS | 237940 | 238110 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
| GO:0005622 | intracellular |
| GO:0006396 | RNA processing |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.