PH01001439G0390's details annotation
1.Annotation
ICBR annotation: homeobox domain containing protein, expressed
Blast result AT2G23760 : 4.60E-60
Blast annotation: BEL1-like homeodomain 4
2.Location
Scaffold: PH01001439
Strand: +
| Region | Start | End |
| gene | 316949 | 325888 |
| mRNA | 316949 | 325888 |
| exon | 316949 | 318546 |
| exon | 319650 | 320035 |
| exon | 320552 | 320725 |
| exon | 321126 | 321210 |
| exon | 325265 | 325888 |
| CDS | 318466 | 318546 |
| CDS | 319650 | 320035 |
| CDS | 320552 | 320725 |
| CDS | 321126 | 321210 |
| CDS | 325265 | 325801 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000024 | HB-BELL Transcription_Regulator(from iTAK) TALE Transcription_Regulator(from PlantTFDB) photosystem I, chlorophyll binding, DNA binding, Photosynthesis regulation of transcription, DNA-dependent, RLK-Pelle_LRR-Xa (from iTAK) sequence-specific DNA binding, Photosynthesis |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF07526.10 | POX | 27 | 78 |
| PF05920.10 | Homeobox_KN | 237 | 253 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.