PH01001445G0360's details annotation
1.Annotation
ICBR annotation: VHS and GAT domain containing protein, expressed
Blast result AT2G38410 : 1.60E-59
Blast annotation: ENTH/VHS/GAT family protein
2.Location
Scaffold: PH01001445
Strand: -
| Region | Start | End |
| gene | 250770 | 255380 |
| mRNA | 250770 | 255380 |
| exon | 250770 | 251166 |
| exon | 251229 | 251300 |
| exon | 251549 | 251630 |
| exon | 251717 | 251883 |
| exon | 252156 | 252237 |
| exon | 252324 | 252490 |
| exon | 253401 | 253514 |
| exon | 254530 | 254628 |
| exon | 254707 | 254785 |
| exon | 255158 | 255380 |
| CDS | 251149 | 251166 |
| CDS | 251229 | 251300 |
| CDS | 251549 | 251630 |
| CDS | 251717 | 251883 |
| CDS | 252156 | 252237 |
| CDS | 252324 | 252490 |
| CDS | 253401 | 253514 |
| CDS | 254530 | 254628 |
| CDS | 254707 | 254785 |
| CDS | 255158 | 255210 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00790.18 | VHS | 18 | 102 |
| PF03127.13 | GAT | 264 | 307 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005622 | intracellular |
| GO:0006886 | intracellular protein transport |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.