PH01001447G0250's details annotation
1.Annotation
ICBR annotation: zinc finger, C3HC4 type domain containing protein, expressed
Blast result AT3G26730 : 3.00E-101
Blast annotation: RING/U-box superfamily protein
2.Location
Scaffold: PH01001447
Strand: +
| Region | Start | End |
| gene | 171546 | 177424 |
| mRNA | 171546 | 177424 |
| exon | 171546 | 171822 |
| exon | 172602 | 172775 |
| exon | 173243 | 173243 |
| exon | 174565 | 174611 |
| exon | 174718 | 175962 |
| exon | 176048 | 176136 |
| exon | 176516 | 177424 |
| CDS | 171724 | 171822 |
| CDS | 172602 | 172775 |
| CDS | 173243 | 173243 |
| CDS | 174565 | 174611 |
| CDS | 174718 | 175962 |
| CDS | 176048 | 176136 |
| CDS | 176516 | 176528 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00097.24 | zf-C3HC4 | 270 | 316 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
| GO:0008270 | zinc ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.