PH01001451G0080's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT1G33240 : 9.60E-95
Blast annotation: GT-2-like 1
2.Location
Scaffold: PH01001451
Strand: +
| Region | Start | End |
| gene | 28239 | 32258 |
| mRNA | 28239 | 32258 |
| exon | 28239 | 29286 |
| exon | 29975 | 31274 |
| exon | 31367 | 32258 |
| CDS | 28919 | 29286 |
| CDS | 29975 | 31274 |
| CDS | 31367 | 31633 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | Trihelix |
| Transcription_Regulator(from PlantTFDB) | Trihelix |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13837.5 | Myb_DNA-bind_4 | 87 | 173 |
| PF13837.5 | Myb_DNA-bind_4 | 392 | 479 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003682 | chromatin binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.