Annotation of co-expression genes

PH01001451G0570's details annotation

1.Annotation

ICBR annotation: kinesin motor domain containing protein, expressed

Blast result AT2G21300 : 0.00E+00
Blast annotation: ATP binding microtubule motor family protein

2.Location

Scaffold: PH01001451
Strand: +

RegionStartEnd
gene349092356163
mRNA349092356163
exon349092350339
exon351115351204
exon351294351394
exon351475351588
exon351663351746
exon352016352081
exon352163352287
exon352417352750
exon352987353088
exon353172353879
exon354250354545
exon354650356163
CDS350102350339
CDS351115351204
CDS351294351394
CDS351475351588
CDS351663351746
CDS352016352081
CDS352163352287
CDS352417352750
CDS352987353088
CDS353172353879
CDS354250354545
CDS354650354977

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00225.22Kinesin36213
PF00225.22Kinesin223330
PF11995.7DUF3490679842

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003777microtubule motor activity
GO:0005524ATP binding
GO:0005875microtubule associated complex
GO:0007018microtubule-based movement

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.