PH01001452G0130's details annotation
1.Annotation
ICBR annotation: Sec1 family transport protein, putative, expressed
Blast result AT1G12360 : 6.20E-79
Blast annotation: Sec1/munc18-like (SM) proteins superfamily
2.Location
Scaffold: PH01001452
Strand: -
| Region | Start | End |
| gene | 133233 | 145454 |
| mRNA | 133233 | 145454 |
| exon | 133233 | 133742 |
| exon | 133822 | 133911 |
| exon | 134076 | 134166 |
| exon | 137244 | 137446 |
| exon | 139186 | 139263 |
| exon | 139344 | 139457 |
| exon | 139787 | 139804 |
| exon | 140021 | 140094 |
| exon | 141291 | 141591 |
| exon | 143019 | 143114 |
| exon | 143196 | 143321 |
| exon | 143856 | 145454 |
| CDS | 133650 | 133742 |
| CDS | 133822 | 133911 |
| CDS | 134076 | 134166 |
| CDS | 137244 | 137446 |
| CDS | 139186 | 139263 |
| CDS | 139344 | 139457 |
| CDS | 139787 | 139804 |
| CDS | 140021 | 140094 |
| CDS | 141291 | 141591 |
| CDS | 143019 | 143114 |
| CDS | 143196 | 143321 |
| CDS | 143856 | 143915 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001292 | LSD Transcription_Regulator(from PlantTFDB) C2C2-LSD Transcription_Regulator(from iTAK) CAMK_CDPK (from iTAK) vesicle docking involved in exocytosis, endoplasmic reticulum, Protein_processing_in_endoplasmic_reticulum |
| coexpression network | CFinderM001293 | CAMK_CDPK (from iTAK) vesicle docking involved in exocytosis, Protein_processing_in_endoplasmic_reticulum |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00995.22 | Sec1 | 20 | 417 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0006904 | vesicle docking involved in exocytosis |
| GO:0016192 | vesicle-mediated transport |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.