PH01001452G0340's details annotation
1.Annotation
ICBR annotation: tetratricopeptide repeat domain containing protein, expressed
Blast result AT2G06210 : 2.00E-103
Blast annotation: binding
2.Location
Scaffold: PH01001452
Strand: +
| Region | Start | End |
| gene | 295131 | 302501 |
| mRNA | 295131 | 302501 |
| exon | 295131 | 295786 |
| exon | 295869 | 295976 |
| exon | 296078 | 296302 |
| exon | 297478 | 297744 |
| exon | 297847 | 297918 |
| exon | 300401 | 300694 |
| exon | 300899 | 302501 |
| CDS | 295679 | 295786 |
| CDS | 295869 | 295976 |
| CDS | 296078 | 296302 |
| CDS | 297478 | 297744 |
| CDS | 297847 | 297918 |
| CDS | 300401 | 300694 |
| CDS | 300899 | 301015 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000592 | transcription, DNA-dependent, cytoplasm, |
| coexpression network | CFinderM001247 | CAMTA Transcription_Regulator(from PlantTFDB) superoxide metabolic process, Peroxisome Protein_export superoxide dismutase activity, |
| coexpression network | CFinderM001595 | dephosphorylation, Butanoate_metabolism Citrate_cycle_(TCA_cycle) Pyruvate_metabolism |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.