PH01001453G0030's details annotation
1.Annotation
ICBR annotation: glutaredoxin, putative, expressed
Blast result AT5G01420 : 3.70E-26
Blast annotation: Glutaredoxin family protein
2.Location
Scaffold: PH01001453
Strand: +
| Region | Start | End |
| gene | 25249 | 30629 |
| mRNA | 25249 | 30629 |
| exon | 25249 | 25569 |
| exon | 25680 | 26269 |
| exon | 26486 | 26556 |
| exon | 27589 | 27662 |
| exon | 28208 | 28578 |
| exon | 28767 | 30629 |
| CDS | 25398 | 25569 |
| CDS | 25680 | 26269 |
| CDS | 26486 | 26556 |
| CDS | 27589 | 27662 |
| CDS | 28208 | 28578 |
| CDS | 28767 | 29189 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001817 | GH10 Glycoside_Hydrolases CBM22 Carbohydrate-Binding_Modules |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01429.18 | MBD | 17 | 57 |
| PF00462.23 | Glutaredoxin | 452 | 519 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
| GO:0005634 | nucleus |
| GO:0009055 | electron carrier activity |
| GO:0015035 | protein disulfide oxidoreductase activity |
| GO:0045454 | cell redox homeostasis |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.