PH01001457G0150's details annotation
1.Annotation
ICBR annotation: NOL1/NOP2/sun family protein, putative, expressed
Blast result AT1G06560 : 8.10E-44
Blast annotation: NOL1/NOP2/sun family protein
2.Location
Scaffold: PH01001457
Strand: -
| Region | Start | End |
| gene | 90540 | 95637 |
| mRNA | 90540 | 95637 |
| exon | 90540 | 90817 |
| exon | 91058 | 91140 |
| exon | 93344 | 93481 |
| exon | 93708 | 93816 |
| exon | 95252 | 95637 |
| CDS | 90686 | 90817 |
| CDS | 91058 | 91140 |
| CDS | 93344 | 93481 |
| CDS | 93708 | 93816 |
| CDS | 95252 | 95515 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01472.19 | PUA | 72 | 160 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003723 | RNA binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.