PH01001457G0410's details annotation
1.Annotation
ICBR annotation: DNA-directed RNA polymerase subunit, putative, expressed
Blast result AT1G60620 : 2.00E-125
Blast annotation: RNA polymerase I subunit 43
2.Location
Scaffold: PH01001457
Strand: +
| Region | Start | End |
| gene | 281828 | 290658 |
| mRNA | 281828 | 290658 |
| exon | 281828 | 282382 |
| exon | 282956 | 283141 |
| exon | 283276 | 283405 |
| exon | 283498 | 283578 |
| exon | 287649 | 287830 |
| exon | 288189 | 288284 |
| exon | 288902 | 288995 |
| exon | 289630 | 289743 |
| exon | 289876 | 290658 |
| CDS | 282254 | 282382 |
| CDS | 282956 | 283141 |
| CDS | 283276 | 283405 |
| CDS | 283498 | 283578 |
| CDS | 287649 | 287830 |
| CDS | 288189 | 288284 |
| CDS | 288902 | 288995 |
| CDS | 289630 | 289743 |
| CDS | 289876 | 289979 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01193.23 | RNA_pol_L | 84 | 363 |
| PF01000.25 | RNA_pol_A_bac | 116 | 256 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Purine metabolism | DNA-directed RNA polymerases I and III subunit RPAC1[EC:2.7.7.6] | ko00230 | K03027 |
| Pyrimidine metabolism | DNA-directed RNA polymerases I and III subunit RPAC1[EC:2.7.7.6] | ko00240 | K03027 |
| RNA polymerase | DNA-directed RNA polymerases I and III subunit RPAC1[EC:2.7.7.6] | ko03020 | K03027 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
| GO:0003899 | DNA-directed RNA polymerase activity |
| GO:0006351 | transcription, DNA-dependent |
| GO:0046983 | protein dimerization activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.