Annotation of co-expression genes

PH01001459G0120's details annotation

1.Annotation

ICBR annotation: glucosyltransferase, putative, expressed

Blast result AT5G38460 : 3.90E-21
Blast annotation: ALG6, ALG8 glycosyltransferase family

2.Location

Scaffold: PH01001459
Strand: -

RegionStartEnd
gene8078781658
mRNA8078781658
exon8078781658
CDS8126381625

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000067GT57 GlycosylTransferases
mitochondrial_respiratory_chain_complex_III
endoplasmic reticulum membrane,
methylation,
mitochondrial electron transport, ubiquinol to cytochrome c,
N-Glycan_biosynthesis
Oxidative_phosphorylation
nucleobase-containing compound metabolic process,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
GlycosylTransferasesGT57

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF03155.14Alg6_Alg81992

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
N-Glycan biosynthesisalpha-1,3-glucosyltransferase [EC:2.4.1.267]ko00510K03848

10.Gene Ontology

GO AccessionGO Annotation
GO:0005789endoplasmic reticulum membrane
GO:0016758transferase activity, transferring hexosyl groups

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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