PH01001461G0110's details annotation
1.Annotation
ICBR annotation: DJ-1 family protein, putative, expressed
Blast result AT1G53280 : 5.30E-99
Blast annotation: Class I glutamine amidotransferase-like superfamily protein
2.Location
Scaffold: PH01001461
Strand: +
| Region | Start | End |
| gene | 45835 | 52854 |
| mRNA | 45835 | 52854 |
| exon | 45835 | 46417 |
| exon | 46951 | 47133 |
| exon | 47317 | 47466 |
| exon | 47567 | 47749 |
| exon | 48210 | 48290 |
| exon | 49475 | 49678 |
| exon | 49761 | 49946 |
| exon | 50398 | 50679 |
| exon | 51003 | 52854 |
| CDS | 46256 | 46417 |
| CDS | 46951 | 47133 |
| CDS | 47317 | 47466 |
| CDS | 47567 | 47749 |
| CDS | 48210 | 48290 |
| CDS | 49475 | 49678 |
| CDS | 49761 | 49946 |
| CDS | 50398 | 50679 |
| CDS | 51003 | 51203 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000589 | TKL-Pl-1 (from iTAK) TKL-Pl-6 (from iTAK) Fructose_and_mannose_metabolism 6-phosphofructokinase complex, diphosphate-fructose-6-phosphate 1-phosphotransferase activity, cysteine-type endopeptidase activity, 6-phosphofructokinase activity, protein kinase activity, ATP binding, transferase activity, transferring phosphorus-containing groups, protein phosphorylation, fructose_6-phosphate_metabolic_process RLK-Pelle_RLCK-VIIa-2 (from iTAK) |
| coexpression network | CFinderM000925 | Ribosome translation, fructose_6-phosphate_metabolic_process Fructose_and_mannose_metabolism GARP-G2-like Transcription_Regulator(from iTAK) G2-like Transcription_Regulator(from PlantTFDB) diphosphate-fructose-6-phosphate 1-phosphotransferase activity, structural constituent of ribosome, large ribosomal subunit, 6-phosphofructokinase complex, 6-phosphofructokinase activity, |
| coexpression network | CFinderM001197 | Ribosome translation, G2-like Transcription_Regulator(from PlantTFDB) GARP-G2-like Transcription_Regulator(from iTAK) L-ascorbic acid binding, structural constituent of ribosome, Arginine_and_proline_metabolism |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01965.23 | DJ-1_PfpI | 53 | 211 |
| PF01965.23 | DJ-1_PfpI | 253 | 368 |
| PF01965.23 | DJ-1_PfpI | 475 | 525 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.