PH01001461G0410's details annotation
1.Annotation
ICBR annotation: histone-lysine N-methyltransferase ATX5, putative, expressed
Blast result AT5G53430 : 0.00E+00
Blast annotation: SET domain group 29
2.Location
Scaffold: PH01001461
Strand: -
| Region | Start | End |
| gene | 242280 | 251448 |
| mRNA | 242280 | 251448 |
| exon | 242280 | 242623 |
| exon | 242750 | 242850 |
| exon | 242940 | 243014 |
| exon | 243364 | 243450 |
| exon | 244064 | 244153 |
| exon | 244229 | 244285 |
| exon | 244379 | 244465 |
| exon | 245133 | 245331 |
| exon | 245649 | 245713 |
| exon | 246156 | 246260 |
| exon | 246382 | 246573 |
| exon | 247278 | 247423 |
| exon | 247806 | 247930 |
| exon | 248065 | 248167 |
| exon | 248250 | 248325 |
| exon | 248463 | 248598 |
| exon | 249155 | 249244 |
| exon | 249603 | 249631 |
| exon | 249696 | 249764 |
| exon | 249871 | 249984 |
| exon | 250079 | 250286 |
| exon | 250363 | 250418 |
| exon | 250652 | 251448 |
| CDS | 242533 | 242623 |
| CDS | 242750 | 242850 |
| CDS | 242940 | 243014 |
| CDS | 243364 | 243450 |
| CDS | 244064 | 244153 |
| CDS | 244229 | 244285 |
| CDS | 244379 | 244465 |
| CDS | 245133 | 245331 |
| CDS | 245649 | 245713 |
| CDS | 246156 | 246260 |
| CDS | 246382 | 246573 |
| CDS | 247278 | 247423 |
| CDS | 247806 | 247930 |
| CDS | 248065 | 248167 |
| CDS | 248250 | 248325 |
| CDS | 248463 | 248598 |
| CDS | 249155 | 249244 |
| CDS | 249603 | 249631 |
| CDS | 249696 | 249764 |
| CDS | 249871 | 249984 |
| CDS | 250079 | 250286 |
| CDS | 250363 | 250418 |
| CDS | 250652 | 251329 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | SET |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00855.16 | PWWP | 171 | 267 |
| PF13831.5 | PHD_2 | 513 | 547 |
| PF13832.5 | zf-HC5HC2H_2 | 554 | 610 |
| PF13832.5 | zf-HC5HC2H_2 | 621 | 730 |
| PF00856.27 | SET | 861 | 966 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
| GO:0008270 | zinc ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.