Annotation of co-expression genes

PH01001462G0020's details annotation

1.Annotation

ICBR annotation: CCT/B-box zinc finger protein, putative, expressed

Blast result AT2G24790 : 2.10E-54
Blast annotation: CONSTANS-like 3

2.Location

Scaffold: PH01001462
Strand: -

RegionStartEnd
gene61397875
mRNA61397875
exon61396552
exon66506823
exon68877875
CDS62236552
CDS66506823
CDS68877288

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000750CO-like Transcription_Regulator(from PlantTFDB)
C2C2-CO-like Transcription_Regulator(from iTAK)
zinc ion binding,
intracellular,
Others Transcription_Regulator(from iTAK)
actin binding,
protein binding,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
Transcription_Regulator(from iTAK)C2C2-CO-like
Transcription_Regulator(from PlantTFDB)CO-like

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00643.23zf-B_box59104
PF06203.13CCT225267

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0005515protein binding
GO:0005622intracellular
GO:0008270zinc ion binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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