PH01001467G0230's details annotation
1.Annotation
ICBR annotation: Ubiquitin family domain containing protein, expressed
Blast result AT3G13235 : 4.00E-149
Blast annotation: ubiquitin family protein
2.Location
Scaffold: PH01001467
Strand: -
| Region | Start | End |
| gene | 143204 | 151997 |
| mRNA | 143204 | 151997 |
| exon | 143204 | 143557 |
| exon | 143905 | 143978 |
| exon | 144185 | 144254 |
| exon | 144539 | 144631 |
| exon | 145819 | 145950 |
| exon | 146277 | 146370 |
| exon | 146569 | 146630 |
| exon | 147029 | 147073 |
| exon | 147157 | 147219 |
| exon | 148099 | 148164 |
| exon | 148537 | 148653 |
| exon | 149376 | 149484 |
| exon | 149948 | 150075 |
| exon | 150173 | 150205 |
| exon | 150440 | 151997 |
| CDS | 143429 | 143557 |
| CDS | 143905 | 143978 |
| CDS | 144185 | 144254 |
| CDS | 144539 | 144631 |
| CDS | 145819 | 145950 |
| CDS | 146277 | 146370 |
| CDS | 146569 | 146630 |
| CDS | 147029 | 147073 |
| CDS | 147157 | 147219 |
| CDS | 148099 | 148164 |
| CDS | 148537 | 148653 |
| CDS | 149376 | 149484 |
| CDS | 149948 | 150075 |
| CDS | 150173 | 150205 |
| CDS | 150440 | 150505 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00240.22 | ubiquitin | 3 | 71 |
| PF09668.9 | Asp_protease | 173 | 279 |
| PF09668.9 | Asp_protease | 305 | 340 |
| PF00627.30 | UBA | 389 | 423 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004190 | aspartic-type endopeptidase activity |
| GO:0005515 | protein binding |
| GO:0006508 | proteolysis |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.