Annotation of co-expression genes

PH01001470G0030's details annotation

1.Annotation

ICBR annotation: sulfite oxidase, putative, expressed

Blast result AT3G01910 : 6.00E-131
Blast annotation: sulfite oxidase

2.Location

Scaffold: PH01001470
Strand: -

RegionStartEnd
gene885017629
mRNA885017629
exon88509083
exon92319266
exon95879737
exon1011210215
exon1031110526
exon1151511685
exon1319213293
exon1336813478
exon1512015215
exon1529315411
exon1588915963
exon1696417021
exon1751917629
CDS88899083
CDS92319266
CDS95879737
CDS1011210215
CDS1031110526
CDS1151511685
CDS1319213293
CDS1336813478
CDS1512015215
CDS1529315411
CDS1588915963
CDS1696417021
CDS1751917593

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00174.18Oxidored_molyb45180
PF03404.15Mo-co_dimer249374

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Sulfur metabolismsulfite oxidase [EC:1.8.3.1]ko00920K00387

10.Gene Ontology

GO AccessionGO Annotation
GO:0009055electron carrier activity
GO:0016491oxidoreductase activity
GO:0030151molybdenum ion binding
GO:0046872metal ion binding
GO:0055114oxidation-reduction process

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.