Annotation of co-expression genes

PH01001470G0110's details annotation

1.Annotation

ICBR annotation: phosphoribulokinase/Uridine kinase family protein, expressed

Blast result AT3G27190 : 0.00E+00
Blast annotation: uridine kinase-like 2

2.Location

Scaffold: PH01001470
Strand: -

RegionStartEnd
gene6859175335
mRNA6859175335
exon6859169718
exon6981169893
exon7003170103
exon7022370295
exon7112871188
exon7192171981
exon7226272456
exon7261772696
exon7286772963
exon7360373724
exon7382873897
exon7480674897
exon7501775335
CDS6957569718
CDS6981169893
CDS7003170103
CDS7022370295
CDS7112871188
CDS7192171981
CDS7226272456
CDS7261772696
CDS7286772963
CDS7360373724
CDS7382873897
CDS7480674897
CDS7501775212

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00485.17PRK64251
PF14681.5UPRTase275447

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Drug metabolism - other enzymesuridine kinase [EC:2.7.1.48]ko00983K00876
Pyrimidine metabolismuridine kinase [EC:2.7.1.48]ko00240K00876

10.Gene Ontology

GO AccessionGO Annotation
GO:0004849uridine kinase activity
GO:0005524ATP binding
GO:0008152metabolic process
GO:0016301kinase activity
GO:0016773phosphotransferase activity, alcohol group as acceptor

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.