PH01001470G0360's details annotation
1.Annotation
ICBR annotation: SAM domain containing protein, putative, expressed
Blast result AT3G07170 : 6.00E-27
Blast annotation: Sterile alpha motif (SAM) domain-containing protein
2.Location
Scaffold: PH01001470
Strand: -
| Region | Start | End |
| gene | 230135 | 235707 |
| mRNA | 230135 | 235707 |
| exon | 230135 | 230924 |
| exon | 231662 | 231724 |
| exon | 231801 | 231875 |
| exon | 232407 | 232699 |
| exon | 232800 | 232867 |
| exon | 233582 | 235707 |
| CDS | 230850 | 230924 |
| CDS | 231662 | 231724 |
| CDS | 231801 | 231875 |
| CDS | 232407 | 232699 |
| CDS | 232800 | 232867 |
| CDS | 233582 | 233685 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000606 | histone_H2A_acetylation CTP biosynthetic process, histone_H4_acetylation protein neddylation, nucleoside_diphosphate_phosphorylation UTP biosynthetic process, GTP biosynthetic process, carbohydrate phosphorylation, chromatin remodeling, |
| coexpression network | CFinderM000744 | Arginine_and_proline_metabolism Phagosome |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00536.29 | SAM_1 | 160 | 211 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.