Annotation of co-expression genes

PH01001472G0120's details annotation

1.Annotation

ICBR annotation: 2-oxoglutarate dehydrogenase E1 component, mitochondrial precursor, putative, expressed

Blast result AT3G55410 : 0
Blast annotation: 2-oxoglutarate dehydrogenase, E1 component

2.Location

Scaffold: PH01001472
Strand: -

RegionStartEnd
gene101642107009
mRNA101642107009
exon101642101943
exon102140102263
exon102351102566
exon102670102798
exon103879104125
exon104569104901
exon104990105216
exon105466105850
exon105900107009
CDS101708101943
CDS102140102263
CDS102351102566
CDS102670102798
CDS103879104125
CDS104569104901
CDS104990105216
CDS105466105850
CDS105900106189

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00676.19E1_dh95273
PF02779.23Transket_pyr343558
PF16870.4OxoGdeHyase_C579720

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0004591oxoglutarate dehydrogenase (succinyl-transferring) activity
GO:0006099tricarboxylic acid cycle
GO:0008152metabolic process
GO:0016624oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
GO:0030976thiamine pyrophosphate binding
GO:0055114oxidation-reduction process

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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