PH01001473G0180's details annotation
1.Annotation
ICBR annotation: ATP-dependent protease La, putative, expressed
Blast result AT2G25740 : 7.80E-94
Blast annotation: ATP-dependent protease La (LON) domain protein
2.Location
Scaffold: PH01001473
Strand: +
| Region | Start | End |
| gene | 112919 | 119962 |
| mRNA | 112919 | 119962 |
| exon | 112919 | 114333 |
| exon | 115129 | 115214 |
| exon | 115292 | 115369 |
| exon | 115691 | 115699 |
| exon | 116124 | 116171 |
| exon | 116959 | 117014 |
| exon | 117111 | 117660 |
| exon | 117892 | 118097 |
| exon | 118588 | 118751 |
| exon | 118885 | 119962 |
| CDS | 114125 | 114333 |
| CDS | 115129 | 115214 |
| CDS | 115292 | 115369 |
| CDS | 115691 | 115699 |
| CDS | 116124 | 116171 |
| CDS | 116959 | 117014 |
| CDS | 117111 | 117660 |
| CDS | 117892 | 118097 |
| CDS | 118588 | 118751 |
| CDS | 118885 | 119038 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02190.15 | LON_substr_bdg | 143 | 403 |
| PF03226.13 | Yippee-Mis18 | 408 | 506 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004176 | ATP-dependent peptidase activity |
| GO:0006508 | proteolysis |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.