PH01001475G0170's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT1G50660 : 1.00E-106
Blast annotation: -
2.Location
Scaffold: PH01001475
Strand: +
| Region | Start | End |
| gene | 95675 | 101097 |
| mRNA | 95675 | 101097 |
| exon | 95675 | 96897 |
| exon | 98510 | 101097 |
| CDS | 96652 | 96897 |
| CDS | 98510 | 100240 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000480 | TKL-Pl-6 (from iTAK) ARF Transcription_Regulator(from PlantTFDB) B3-ARF Transcription_Regulator(from iTAK) glycerol metabolic process, glycerophosphodiester phosphodiesterase activity, |
| coexpression network | CFinderM000647 | RLK-Pelle_RLCK-VIIa-2 (from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.