PH01001478G0330's details annotation
1.Annotation
ICBR annotation: proteophosphoglycan ppg4, putative, expressed
Blast result AT3G05950 : 3.70E-42
Blast annotation: RmlC-like cupins superfamily protein
2.Location
Scaffold: PH01001478
Strand: +
| Region | Start | End |
| gene | 269959 | 270882 |
| mRNA | 269959 | 270882 |
| exon | 269959 | 270154 |
| exon | 270244 | 270882 |
| CDS | 270040 | 270154 |
| CDS | 270244 | 270776 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000037 | AP2/ERF-ERF Transcription_Regulator(from iTAK) ERF Transcription_Regulator(from PlantTFDB) Tify Transcription_Regulator(from iTAK) apoplast, Cysteine_and_methionine_metabolism Plant_hormone_signal_transduction regulation of transcription, DNA-dependent, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00190.21 | Cupin_1 | 76 | 206 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0030145 | manganese ion binding |
| GO:0045735 | nutrient reservoir activity |
| GO:0048046 | apoplast |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.