PH01001484G0250's details annotation
1.Annotation
ICBR annotation: SEY1, putative, expressed
Blast result AT5G45160 : 0.00E+00
Blast annotation: Root hair defective 3 GTP-binding protein (RHD3)
2.Location
Scaffold: PH01001484
Strand: -
| Region | Start | End |
| gene | 151591 | 160695 |
| mRNA | 151591 | 160695 |
| exon | 151591 | 152459 |
| exon | 153207 | 153315 |
| exon | 153691 | 153864 |
| exon | 154347 | 154451 |
| exon | 154537 | 154698 |
| exon | 154815 | 154911 |
| exon | 155041 | 155303 |
| exon | 155450 | 155574 |
| exon | 156173 | 156338 |
| exon | 156765 | 156843 |
| exon | 157634 | 157731 |
| exon | 157809 | 157877 |
| exon | 158008 | 158166 |
| exon | 158345 | 158401 |
| exon | 158472 | 158534 |
| exon | 158614 | 158661 |
| exon | 158771 | 158836 |
| exon | 158930 | 158993 |
| exon | 159111 | 159181 |
| exon | 159879 | 159981 |
| exon | 160091 | 160157 |
| exon | 160448 | 160695 |
| CDS | 152392 | 152459 |
| CDS | 153207 | 153315 |
| CDS | 153691 | 153864 |
| CDS | 154347 | 154451 |
| CDS | 154537 | 154698 |
| CDS | 154815 | 154911 |
| CDS | 155041 | 155303 |
| CDS | 155450 | 155574 |
| CDS | 156173 | 156338 |
| CDS | 156765 | 156843 |
| CDS | 157634 | 157731 |
| CDS | 157809 | 157877 |
| CDS | 158008 | 158166 |
| CDS | 158345 | 158401 |
| CDS | 158472 | 158534 |
| CDS | 158614 | 158661 |
| CDS | 158771 | 158836 |
| CDS | 158930 | 158993 |
| CDS | 159111 | 159181 |
| CDS | 159879 | 159981 |
| CDS | 160091 | 160157 |
| CDS | 160448 | 160616 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000332 | ARID Transcription_Regulator(from iTAK) nucleosome assembly, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF05879.11 | RHD3 | 51 | 729 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.