PH01001485G0260's details annotation
1.Annotation
ICBR annotation: OsFBLD1 - F-box, LRR and FBD domain containing protein, expressed
Blast result AT5G18780 : 5.90E-09
Blast annotation: F-box/RNI-like superfamily protein
2.Location
Scaffold: PH01001485
Strand: -
| Region | Start | End |
| gene | 138271 | 140332 |
| mRNA | 138271 | 140332 |
| exon | 138271 | 139440 |
| exon | 139528 | 140332 |
| CDS | 139072 | 139440 |
| CDS | 139528 | 139659 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00646.32 | F-box | 14 | 50 |
| PF08387.9 | FBD | 382 | 421 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.