PH01001488G0340's details annotation
1.Annotation
ICBR annotation: glycine-rich protein, putative, expressed
Blast result AT5G11700 : 1.00E-120
Blast annotation: -
2.Location
Scaffold: PH01001488
Strand: +
| Region | Start | End |
| gene | 274819 | 277653 |
| mRNA | 274819 | 277653 |
| exon | 274819 | 275079 |
| exon | 275564 | 275752 |
| exon | 275841 | 276127 |
| exon | 276215 | 276395 |
| exon | 276485 | 276727 |
| exon | 276923 | 277005 |
| exon | 277146 | 277653 |
| CDS | 274819 | 275079 |
| CDS | 275564 | 275752 |
| CDS | 275841 | 276127 |
| CDS | 276215 | 276395 |
| CDS | 276485 | 276727 |
| CDS | 276923 | 277005 |
| CDS | 277146 | 277293 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001353 | TKL-Pl-7 (from iTAK) Others Transcription_Regulator(from iTAK) |
| coexpression network | CFinderM001594 | Steroid_biosynthesis cholestenol delta-isomerase activity, sterol metabolic process, |
| coexpression network | CFinderM001812 | intracellular transport, 5'-3' exoribonuclease activity, nucleobase-containing compound metabolic process, exonuclease activity, Ribosome_biogenesis_in_eukaryotes RNA_degradation |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.