PH01001489G0180's details annotation
1.Annotation
ICBR annotation: ribosomal protein L11 methyltransferase-related, putative, expressed
Blast result AT5G53920 : 2.00E-73
Blast annotation: ribosomal protein L11 methyltransferase-related
2.Location
Scaffold: PH01001489
Strand: -
| Region | Start | End |
| gene | 102018 | 104942 |
| mRNA | 102018 | 104942 |
| exon | 102018 | 102203 |
| exon | 102313 | 102636 |
| exon | 102740 | 102907 |
| exon | 103059 | 103124 |
| exon | 103511 | 103651 |
| exon | 103849 | 103932 |
| exon | 104071 | 104942 |
| CDS | 102105 | 102203 |
| CDS | 102313 | 102636 |
| CDS | 102740 | 102907 |
| CDS | 103059 | 103124 |
| CDS | 103511 | 103651 |
| CDS | 103849 | 103932 |
| CDS | 104071 | 104415 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF06325.12 | PrmA | 103 | 406 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005737 | cytoplasm |
| GO:0006479 | protein methylation |
| GO:0008276 | protein methyltransferase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.